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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagtaccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag

Basic information

species Arabidopsis thaliana
transcript AT3G50240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G18540.1 (Glycine max), 5'ss of exon 4
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagtaccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag
||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| ||||||  | |  |    |||| | |    ||| | || ||     | | |  ||   |          | ||  |  | |  || | |||   |    |   |    |   | ||     | || ||| | ||   ||                                    
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTAgtaagtttccacaat---tctttgtta---tttaagttctt----gtcctgttctttgcc---------ttaggaagaagaggaaattcattctggtctagtttcatatgttatag--tctatatggttaattttacag------------------------------------

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 8
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagta-ccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag
||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| ||||||  |||     || | |||  | || |    ||| | |||         ||   |  |  |   || ||  ||  ||         |  || | |     | ||      |  |   | |||||| | ||   ||                                    
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaattctttgttacttaagtt----attgtcctgtt-------ctttgccttaggaagatgaggaaattcat--------tctggtctagtttcatat---gttataatctatattgttaattttacag------------------------------------

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagtaccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag
||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||           ||| |||| | |||    |||| |   ||        | | | ||   |  ||  ||    |  || |||  ||  |  |||      ||| ||||             | |  |  || || ||||     ||| |  |||||| |   |   |||
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagta-----------tctcagattaccttatctttttcccttatttcttgtcctattttc---ccctc--cttctcctcaatgtaattggag--aaacttggtattgaaact---------ccatacgttctggtgc-ctaatgaagaagcc--ctttatct---tattcag