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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatatttatgcatgaacctttcaatatttcccaacaaagttttcacacttttctgttgggacttatttatatggtttacag

Basic information

species Arabidopsis thaliana
transcript AT3G46970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g63270.1 (Oryza sativa), 5'ss of exon 7
TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatatttatgcatgaacctttcaatatt-tcccaacaaagttttcacacttttctgttgggacttatttatatggtttacag--------------------------------------------------------------
|||||||||| |||||||||||||| || |||||||| ||| |  | || |||||||   | |||||||| |||||||| || |||||| | |||   |||| |  |  | ||     ||  |  ||||||  |   | |    || | |   |||||         |||||| |  | ||| ||                                                               
TGAATGACACTCACCCAACTCTTGCGATTCCTGAGCTGATGAGGCTACTCATGGATGTGGAGGGACTTGGTTGGGATGAAGCATGGGATATCACAAATAAgtgagct-ctaatatgacaag-tgacaatataatttgatctcttttcttatctttttccaccattgtttatttttccgcttttcattttaacaagagtaattcaacttaaaagcttgacctaatcaataaattatttgaatggtccag

upper sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G45210.1 (Glycine max), 5'ss of exon 8
TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatatttatgcatgaacctttcaatatttcccaacaaagttttcacacttttctgttgggacttatttatatggtttacag-------------------------------------------
||||||| ||||||||||| ||||||||||| ||| | |||||||| |||||||||||  | || |||||||||||||| || ||||||||||||||||||| |  || || |  |  |   | | |  | |    |       |||  |  | |||        || |    | | || ||                                              
TGAATGATACACACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGACATCAAAgtcagttaattgtagaaaatgttgttagcaatgattattttccatttt-ctttattccaccacccctcacaattgtagtgtattactcattacctcatcactaaaacatgatgctatatcttaaccag

upper sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G07480.1 (Glycine max), 5'ss of exon 7
TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatatttatgcatgaacctttcaa-------tatttcccaacaaagtttt-----cacacttttctgttgggacttatttatatggtttacag------------------------------------
||||||| || |||||||| ||||||||||| ||| | |||||||| |||||||||||  | || |||||||||||||| || |||||||||| |||||||| |   | || |  || |   ||| |        ||||| |||      || |     ||| | |  | ||||     ||||  ||    | |                                       
TGAATGATACTCACCCAACACTTGCAATACCAGAGTTGATGCGATTACTAATGGATGATGAAGGGCTTGGATGGGATGAAGCATGGGATGTGATATCAAAgtcagtaaattgtagataatgtttttaggaatggttattttccattttctttgttccaccacccctcacagttgtagtgtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccag

upper sequence: AT3G46970.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0004g06020.t01 (Vitis vinifera), 5'ss of exon 7
TGAATGACACACACCCAACTCTTGCAATACCTGAGCTCATGCGATTGCTAATGGATGACAATGGACTTGGATGGGATGAGGCTTGGGATGTGACATCAAAgtaaaatat---ttatgcatga---acctttcaat-----atttcccaacaaagttttcacacttttctgttgggacttattt--atatgg-tttacag-----------------
||||||| ||||| || ||||||||||| || ||  | |||||||| || ||||||||| | ||||||| ||||||||| ||||||||||||||||||| ||  | |||   || ||  |||   | |  ||  |      ||| ||| ||     |||    | |  || |    ||||| |  |||    ||||  |                 
TGAATGATACACATCCTACTCTTGCAATTCCAGAATTGATGCGATTACTGATGGATGACGAAGGACTTGCATGGGATGAAGCTTGGGATGTGACATCAAGgttcactatgttttttgtttgatagaacactcgctcatgggttttccagcatgaccttctttgtctgttgctttttcttatgttaatacaactttatggcaaaaatattgaatcag