1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaacaaagaaatagcactttctcttcttcatgttgctgacaaaatgtgtttgaaaactacag
species | Arabidopsis thaliana |
transcript | AT3G46590.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAG GTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACEST: gi|116485643|gb|EG528235.1|EG528235
genomic: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaaca ... aaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTAC
EST: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAG GTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTA
genomic: ACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaaca ... aaaactacagGTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaacaaagaaatagcactttctcttcttcatgttgctgacaaaatgtgtttgaaaactacag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC