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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTCTCACTTGCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGCTTATTACACTGGTATCGTCTTCGAGgttagattttctccatacatggatactggtctatagttttgtaatagcaactgatagacaacgttttgtgatag

Basic information

species Arabidopsis thaliana
transcript AT3G46100.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 8
ACTCTTCTCACTTGCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGCTTATTACACTGGTATCGTCTTCGAGgttagattttctccat-------acatggatactggtctatagttttgtaatagcaactgatagacaacgtt--ttgtgatag-----------------
 || ||||| |||||||||||  ||||||| ||  | ||| | || ||||||||||| ||||| || ||||||||||| |||||||| || || || ||||||||| ||||    |       | ||  ||  |    | ||  |   ||  |  |  | || |   |  ||  | | |  ||                 
GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaaactaaataaatgttatagtttacatgaatataaatagtttatgggttagattagtagcggaagccatgaaaatcctagga

upper sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 5'ss of exon 8
ACTCTTCTCACTTGCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGCTTATTACACTGGTATCGTCTTCGAGgttagattttctccatacatggatactggtctatagttttgtaatagcaa----ctgatagacaacgttttgtg-atag---------------------
||| ||||| ||||||||||||||||| || || |||||||| || || |||||||||||||| || || ||||| ||||| ||||| || || || |||||||| ||| ||   || ||   ||||| |  |  ||||| | | | |      |||| | |    | | |    ||                       
ACTGTTCTCCCTTGCTGAAAAGTTTGGCTACTCTGAGTGGATTCAATTCGATGCATCTGTTGTCCGTGGCCTTGCCTATTATACTGGAATTGTATTTGAGgttaggtttgctatttatatctttactgattgagggttttatgacaccttttttctgaaacatggtgctgtccacatgagttgatgagttagcaaatagg