Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagtttgatcgcttagcacaaatatttctaaacttttgtatagagttgaatccatccacataaatctctaatttctttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27300.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagtttgatcgcttagca-caaatatttctaaactt---ttgtatagagttgaatccatccacataaatctctaatttctttttgcag--------
 | |||||||| |||||||| || || || ||||| || |||||||||||||||||||  ||  ||||||| |||  ||      || | | | |  | ||   |||||   ||   | |  |    || || |||||||||  |       || |             
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt

upper sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagttt--gatcgcttag--cacaaatatttctaaacttttgtatagagttgaatccatccacataaatctct-aatttctttttgcag-------
||||| ||||| ||||| ||||| || || |||||||| |||||||||||||| ||||  ||||||||||||||  |||   || |   |    |||| | |   | ||   ||   || | || | |   || |   ||||     ||  | || |||          
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaactttgggttaaaagttacttaaacttcatttattcaattgaaattagggaaggtattgttggttaagcttt

upper sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagttt--gatcgcttagcacaaatatttc--taaacttttgtatagagttgaatccatccacataaatctc---taatttctttttgcag------
||||| ||||| ||||| ||||| || || |||||||| |||||||||||||| ||||  || |||||||||||| |||   || |   |    |||  |||   | ||   ||   || | || | |  ||  | || ||        |    || || |  |      
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaactttgggttaagagttacttaaacttca-tttatttaaatgaagtaagggaaggcactgttggttgagcttt

upper sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ23968 (Selaginella moellendorffii), 5'ss of exon 6
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagtttgatcgcttagcacaaatatttctaaacttttgtatagagttgaatccatccacataaatctctaatttctttttgcag
 | ||  | |||||||| |||||||| ||| | ||||| ||||| || || |||||||||||||| |||||  | |  |||     |  || ||  ||  |||   || |  ||||  |   || ||                              
CTTGTGATGCGGTTTGCAAATCGCTTTTTTGTTCCACTTTGGAATCGTGATAATATTGCAAACGTCCAGgtatggg--tgacaa--tgaca-aatcatcgctagtgttctaaatagcat-acatgcag-----------------------------