1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTTAAGAGTTTTTTGAGCAAGCTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAGgtaaggtatatgtatgtcttgtttcagctatttgtttgtaactttgtgaacttgtggttcaagcttgtggtttatgatgttgcag
species | Arabidopsis thaliana |
transcript | AT3G19340.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTACTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTEST: gi|164162493|gb|ES128661.1|ES128661
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCT-CTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCT-AAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164048125|gb|ES103485.1|ES103485
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAAC-AATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164174603|gb|ES133574.1|ES133574
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGTCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTEST: gi|164224291|gb|ES068117.1|ES068117
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAG-CTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCT-AAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|86055111|gb|DR350868.1|DR350868
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: AAGCTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164223885|gb|ES125727.1|ES125727
genomic: AAGCTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164168438|gb|ES026609.1|ES026609
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164195306|gb|ES166808.1|ES166808
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164179933|gb|ES049443.1|ES049443
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTTEST: gi|164237998|gb|ES038674.1|ES038674
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
EST: TAGAATGATTGTTGTTTATAG ACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
genomic: TAGAATGATTGTTGTTTATAGgtaaggtata ... gatgttgcagACGAGCTAGCTCTAAAACAAATCTAGAACGAGGAATCTACGTTAAGCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTAAGAGTTTTTTGAGCAAGCTCACAATACAGGAGCCTACATTCGATAGAATGATTGTTGTTTATAGgtaaggtatatgtatgtcttgtttcagctatttgtttgtaactttgtgaacttgtggttcaagcttgtggtttatgatgttgcag
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