Sequence
atgc intronic sequence ATGC exonic sequenceGTAGATGCTGCTCTTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatgaaatgacactaaatcccaccttttagtattgtcattttggttaccagagaatgtttagttgtcagaaaattaaccttgaagctgtcatctcaatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G16950.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 8
GTAGATGCTGCTCTTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatgaaatgacactaaatcccaccttttagtattgtcattttggttaccagagaatgtttagttgtcagaaaattaaccttgaagctgtcatctcaatgcag
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GTGGATGCAGCCCTTATAGCCACAGGACGGGCACCATTCACAAAAGGACTTGGCTTGGAAAATgta---agtacctgaaggttgaaactgtt--tgctgtcagaacatttcctacag----ttaagtttcaagcatagtgaa-tcggaccctttttttc--ttcag
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 8
GTAGATGCTGCTCTTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatg-aaatgacactaaatcccaccttttagtattgtcattttggttaccagagaatgtttagttgtcagaaaattaaccttgaagctgtcatctcaatgcag
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GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatc----agaattcacaagtt--tta----aatatggt-agcatccaaaacatgcccttttatacag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125231101|gb|EL245186.1|EL245186EST: TTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAAT GTCAATGTTGTGACGCAGAGAGGTTTCATAC
genomic: TTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatgaaatg ... ctcaatgcagGTCAATGTTGTGACGCAGAGAGGTTTCATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGATGCTGCTCTTATTGCTACTGGGAGAGCTCCATTCACCAATGGACTTGGCTTGGAAAATgtatgaaatgacactaaatcccaccttttagtattgtcattttggttaccagagaatgtttagttgtcagaaaattaaccttgaagctgtcatctcaatgcag
- - - - - - - - - - - - - AGAGCT