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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATgtatttaattgttttttttgttccaaaggccaaagctatcaagatctttttctttgtatagtgtacttgactcactccactctattgttaattttatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G16600.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16600.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S132_19V6.1 (Physcomitrella patens), 5'ss of exon 10
AGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATgtatttaattgttttttttgttccaaaggccaaag--ctatcaagatctttttctttgtatagtgtacttgactcactccactctattgttaattttatttcag
||| |||||||||||||||||||| || ||||||||| |||| |  ||| | ||  |  | || ||||| ||  |||| || || |||||  |  | || || | |          | ||| | || ||| || |     |  |  |         ||| |  || |  | |   |  || |||| |   |   | | | |   
AGCAATTGATCGAGCTCATCGTATTGGTCAAACTCGAACTGTCAATGTCTCACGATTCACAATTAAAAACACAATTGAAGATCGTATTTTAGCATTACAGgtttgttcaaaacccatctgtgc-aatggctaaggaatgtttcatgtaacgccacatgtcttctgaagctaaaaaaaacctctctctctctctctctctct---

upper sequence: AT3G16600.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ07681 (Selaginella moellendorffii), 5'ss of exon 10
AGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATgtatttaattgttttttttgttccaaaggccaaagctatcaagatctttttctttgtatagtgtacttgactcactccactctattgttaattttatttcag
||| || ||||||||||||||||||||||| |||||  | ||    ||  |  |  || || | || || ||| ||||||| |||||| |  || | || |||   |  | |   | |    |    |   || | | | | | |||| ||   || | ||                                         
AGCCATCGATCGAGCTCATCGTATCGGACAGACTCGTCCCGTCCACGTTTCAAGGTTTACCGTGAAGAACACCATTGAGGATCGAATTCTAGCTTTACAGgtacg-agctttgaatgtgaagctttggtttaacggtctaacgctcttgtt---tgcacag-----------------------------------------

upper sequence: AT3G16600.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ07734 (Selaginella moellendorffii), 5'ss of exon 10
AGCTATTGATCGAGCTCATCGTATCGGACAAACTCGAGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGAACGAATTTTGACTCTTCATgtatttaattgttttttttgttccaaaggccaaagctatcaagatctttttctttgtatagtgtacttgactcactccactctattgttaattttatttcag
||| || ||||||||||||||||||||||| |||||  | ||    ||  |  |  || || | || || ||| ||||||| |||||| |  |  | || |||   |  | |   | |    |    |   || | | | | | |||| ||   ||   ||                                         
AGCCATCGATCGAGCTCATCGTATCGGACAGACTCGTCCCGTCCACGTTTCAAGGTTTACCGTGAAGAACACCATTGAGGATCGAATTCTAGCGTTACAGgtacg-agctttgaatgtgaagctttggtttaatggtctaacgctcttgtt---tgcgcag-----------------------------------------