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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTCTACTCGTTCGGGGTTGTTCTAGTTGAGCTAGTCACTGGCCGCAAAGCCATTGATATCACCAGGCCGAAAGGCCAGCAATGCCTGACTGAATGGgtaatgatttcatatctttagttttcagcaaagtaacagaactgactctccttttgtggcttgtgatctcag

Basic information

species Arabidopsis thaliana
transcript AT3G13690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os05g51190.4 (Oryza sativa), 5'ss of exon 6
TGATGTCTACTCGTTCGGGGTTGTTCTAGTTGAGCTAGTCACTGGCCGCAAAGCCATTGATATCACCAGGCCGAAAGGCCAGCAATGCCTGACTGAATGGgtaatgatttcatatctttagttttcagcaaagtaacagaactgactctccttttgtggcttgtgatctcag--------------------------------
 ||||| ||||| || ||||||||  |||| || || |||||||| ||||| ||  ||||||| | |||||| || |||||||| | ||| |||||||||||   || ||| |     |||| ||   | |  ||     |     || | ||   |    | | | ||  |                                
CGATGTGTACTCATTTGGGGTTGTGTTAGTGGAACTTGTCACTGGACGCAAGGCTGTTGATATTAACAGGCCAAAGGGCCAGCAGTTCCTCACTGAATGGgt---gagttcgttcacctagtattgcactatttagtgctatatcatcacattagattatgt-taagcttggatatttacttttctgacaagtgacaaacgctg

upper sequence: AT3G13690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G142068_T01 (Zea mays), 5'ss of exon 7
TGATGTCTACTCGTTCGGGGTTGTTCTAGTTGAGCTAGTCACTGGCCGCAAAGCCATTGATATCACCAGGCCGAAAGGCCAGCAATGCCTGACTGAATGGgtaatga----tttcatatctttagttttcagcaa--------agtaacagaactgactctccttttgtggcttgtgatctcag-------------------------------
 ||||||||||||||||||||||| ||||| || || || ||||| || || ||  | || |||| |||||| || |||||||||| ||| || |||||||||   |    |||   ||  ||| | |  |   |        || ||   |||  |||  |   | || | ||   || || |                               
AGATGTCTACTCGTTCGGGGTTGTACTAGTGGAACTTGTAACTGGACGGAAGGCTGTGGACATCAACAGGCCCAAGGGCCAGCAATTCCTAACCGAATGGgtacctacatttttttaattattattatgaaatgattttctttagcaatgaaaccaactagcaactggttggttcatatttctgtcctcgttcatcttgttttcgtctgtaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125034922|gb|EL107191.1|EL107191
EST:     AAGGCCAGCAATGCCTGACTGAATGG                         GCACGTCCTCTACTGGAAGAATATGCGATAGATGAACTTATCGATCCGAGG
genomic: AAGGCCAGCAATGCCTGACTGAATGGgtaatgattt ... gtgatctcagGCACGTCCTCTACTGGAAGAATATGCGATAGATGAACTTATCGATCCGAGG