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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGgtttgacagtttcatttcctatttcttgcttccagtttttgttagggtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaag

Basic information

species Arabidopsis thaliana
transcript AT3G13070.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 8
GGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGgtttgacagtttcatt--tcctatttcttgc-ttcca---gtttttgttagggtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaag
||| |||||||||||||| ||| ||||||||||| |||| || |||||||| |||||||| || ||||||||||| |||||| |    ||| | |  || | ||| |||  || ||   | |||  |||    || | ||    |||    | ||     ||| |||| | |||||||||||||||
GGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGgttggcagattttactcatcatgtttattgagttacaagtgctttacttattaattatatcccccaatctcatagtttgcagaactataatctgtttgattttgaag

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 8
GGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGgtttgacagtttcatt--tcctatttctt--gcttccagt--ttttgttagggtttctttctgttaattgtgttgtagaatgaaatatactgtgtttgattttgaag
 || |||||||||||||| ||| ||||||||||| |||| || || ||||| |||||||| || ||||||||||| |||||| |    ||| | |  || | ||| ||  | | | |||  |||  ||     || | ||    |||    | ||     ||| |||| | |||||||||||||||
AGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCTTATGCAATGGATCTGCTGGATTATGTTCAAAAGgttaggagattttactcatcatgtttattgagttactagtgctttacttgtcaattatatcccccaatctcatagtctgcagaattataatctgtttgattttgaag

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
GGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGgtttgacagtttcat-ttcctatttcttgct----------------tccagtttttgttagggtttctttctgttaattgtgttgtagaat-gaaatat-actgtgtttgattttgaag---------------------------------------------
||| |||||||||||||||||| ||||||| ||||| ||  |||||||||| |||||||| || |||||| ||||||||||| |  ||  |    ||  | ||| ||| |                   ||    ||  |   |||  |||||||  || || |  |  || |   | | | |   | | ||| |  |                                              
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag