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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAGgtaaagcattatgagatactcttatatctcttacatacttttgagataatgcacaagaacttcataactatatgctttagtttctgcatttgacactgccaaattcattaatctctaatatctttgttgttgatctttggtag

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125015244|gb|EL087513.1|EL087513
EST:     GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAG                         ACATGGGTACTAGAAAAAGCAAACTAC
genomic: GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAGgtaaagcatt ... tctttggtagACATGGGTACTAGAAAAAGCAAACTAC
EST: gi|125203131|gb|EL218085.1|EL218085
EST:     GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAG                         ACATGGGTACTAGAAAAAGCAAA
genomic: GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAGgtaaagcatt ... tctttggtagACATGGGTACTAGAAAAAGCAAA
EST: gi|124735531|gb|EH826933.1|EH826933
EST:     GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAG                         ACATGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTAT
genomic: GCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAGgtaaagcatt ... tctttggtagACATGGGTACTAGAAAAAGCAAACTACACCAAGGAAGCTAT