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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGATCTAGCCGGAACTTCTGTATCGATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttctctcatacgtttcgattatagttattcactctgaaaaaacttgtttaacgagacaaacatttgttctctgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G09740.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G20220.1 (Glycine max), 5'ss of exon 8
CTGAGATCTAGCCGGAACTTCTGTATCGATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttctctcatacgtttcgattatagttattcactctgaaaaaacttgtttaac-----gagacaaacatttgttctctgtgcag--------------
||  |||| || || ||||||||||| |||||||||||||||  |||  || |||| || ||||| ||||||||||||||||   |||  ||   |||  || | | ||    || || |  |    | ||   |      |    ||  | |||  ||| |  |               
CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaagg--ctcctatctcttttcatga-acttgaaaacactcagcatttctcttctgctcatgaatttcaatctatgtattctatatatttctgctcaacttg

upper sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G05870.1 (Glycine max), 5'ss of exon 9
CTGAGATCTAGCCGGAACTTCTGTATCGATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaag-tttctctcatacgtttcgattatagttattcactctgaaaaaacttgtttaacgagacaaac-atttgttctctgtgcag--------------
||  |||| || || ||||||||||| |||||||||||||||  |||  || |||| || ||||| ||||||||||||||||  | || |||    |   ||   |    | |||           ||  | |       ||| |     ||  ||| |  ||              
CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcctatcacttttcatgaacttgaaaactcagcactgctcttctgctcttgaatttcaatctgaaagtattctttatagtcctgctcaatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081762|gb|DR377521.1|DR377521
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|124902612|gb|EH976692.1|EH976692
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTAC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTAC
EST: gi|116431994|gb|EG474586.1|EG474586
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|163967177|gb|ES020414.1|ES020414
EST:     TGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATT
genomic: TGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATT
EST: gi|86084593|gb|DR380352.1|DR380352
EST:     SMTATTGTYYTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|116435937|gb|EG478529.1|EG478529
EST:     GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|125076770|gb|EL139802.1|EL139802
EST:     TACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
genomic: TACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATC
EST: gi|164091292|gb|ES196168.1|ES196168
EST:     TTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAA                         TGTACTGAAGTAATGAGATGAACCCTACGAAAGG
genomic: TTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAATGAGATGAACCCTACGAAAGG
EST: gi|164134968|gb|EL996896.1|EL996896
EST:     ATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTCGCATACTTATACAA                         TGTACTGAAGTAAT
genomic: ATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCT-GCATACTTATACAAgtaagtttct ... ctctgtgcagTGTACTGAAGTAAT