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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGATTGTGGAATGTTTATGGTGAAATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCAGgtaaatagcagaaagatactaaacctgccattgtctttagtaggtgagtgtcattttgaaagacgtaagactgcttataattgaaactgtttgtatgatttccacag

Basic information

species Arabidopsis thaliana
transcript AT3G06910.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797942|gb|AU229548.1|AU229548
EST:     AGGTCTGGATCTTTGTTTCACTCAG                         GAACAAATCCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACT-
genomic: AGGTCTGGATCTTTGTTTCACTCAGgtaaatagca ... atttccacagGAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTG
EST: gi|164153513|gb|ES038378.1|ES038378
EST:     CTTTGTTTCACTCAG                         GAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTG
genomic: CTTTGTTTCACTCAGgtaaatagca ... atttccacagGAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTG