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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttcgttttcgaaaagttaatgttctggtaaaatttccatgataactcgggagagatatgaaagaatcagattctcgatatcgacatgattaac...

Basic information

species Arabidopsis thaliana
transcript AT3G02460.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G05360.1 (Glycine max), 5'ss of exon 8
GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttcgttttcgaaaagttaatgttctggt---aaaatttccatgataactcgggagagatatgaa--agaatcagattctcgatatcgacatgattaac
 | ||  |||| || || ||||| ||||||||  ||||||  || || || |  ||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||| | || ||   |  ||||| || |      ||||  |   | ||       ||  ||||||||   ||    ||| |  | | ||  | | | |   
ATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAGgttctcttcctttctctggattttaattttttcacttaaaaaactgtgttatggactatgaatgatatgaattggagcaggatgcatgttttc--cttcact---

upper sequence: AT3G02460.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 7
GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttcgttttcgaaaagttaatgttctggt---aaaatttccatgataactcgggagagatatgaa--agaatcagattctcgatatcgacatgattaac
 | ||  |||| || || ||||| ||| ||||  ||||||  ||||| || || ||||||||||| ||||| ||| | ||| ||||||| ||||||||||||||| | | || ||   |  ||||| || |      ||||  |   | ||       ||  ||||||||   ||    ||| | || | ||  | | | |   
ATTAAACTACCTTTCGAAAAACTCATATATGCCTTGAAAAACTTCCCCGAGGATGCAATGAATCCAGATACATTGTTACCACTGGCTTATTCTATCAAGgttctcgtcctttctctgcattttaattttttcacttaaaaaactgtgttatggactatgaatgatatgaattggagcaggatgcacgttttc--cttcact---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080576|gb|DR376333.1|DR376333
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|301501579|gb|HO207119.1|HO207119
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|19742875|gb|AU228228.1|AU228228
EST:     AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATC-AG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
genomic: AAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCC
EST: gi|124857581|gb|EH942018.1|EH942018
EST:     CCATTGGCTTACTCTATCAAG                         GTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA
genomic: CCATTGGCTTACTCTATCAAGgttctctttc ... ttcatggcagGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGA