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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAATCTCTTTAATCTGGTTGAACACTTCCACAACCGAGGCTTGTATCGTTCAATTTTCCTAAGgtaaaccatctgatcaatctaacttggcatcttccaaataacccaaaaccttggatagaatcaattgtatctaaaaaagcaacaactttcatcagattga...

Basic information

species Arabidopsis thaliana
transcript AT3G02410.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02410.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G05840.1 (Glycine max), 5'ss of exon 8
GTACAATCTCTTTAATCTGGTTGAACACTTCCACAACCGAGGCTTGTATCGTTCAATTTTCCTAAGgtaaaccatctgatcaatctaacttgg---catcttccaaataacccaaaaccttggatagaatcaattgtatctaaaaaagcaacaactttcatcagattga
 |||||  |  |  || | || || ||||||||||| ||||||||| ||||||| |||||| ||||||    |  ||||  || | |  || |   || ||   |  ||        || |   || ||   ||| |   |  |                         
ATACAACTTACTGGATTTAGTGGATCACTTCCACAATCGAGGCTTGGATCGTTCGATTTTCTTAAGgtgtgtc--ctgaataaccgagttttgttacaactatgagctattgtttttccctccttataactgattatcattgcag------------------------