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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaatatctcttttttgagtaaatatcctgacactatccaggtgagtcatgtgagtaaatatcgatgcaattttgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G01120.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G49660.1 (Glycine max), 5'ss of exon 8
GTACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaatatctcttttttgagtaaa-tatcctgacac-tatccaggtgagtca-tgtgagtaaatatcgatgcaattttgatttgcag------------
 |||||| ||||| |||||||||| ||  ||||||| ||||||||||| |||||||| || |   | || ||||||||| |||||||||||||||| |||||||   ||  |  |||     | | | | || || | | | |||| |  | | | | | | | | |||      ||||   | ||  |             
ATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGgtatc--atggcattttgacatgcacactgtcatgcctcgtctccatgctatttaatataatttattattttgttaattgaaacttttaaagttgtcaaatg

upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G37020.3 (Glycine max), 5'ss of exon 8
GTACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaatatctcttttttgagtaaatatcctgacactatccaggtgagtca-tgtgagtaaatatcgatgcaattttgatttgcag--------------
 |||||| ||||| |||||||||| ||  ||||||| ||||||||||| |||||||| || |   | || |||||| || |||||||||||||||| |||||||   ||  |  |  | ||   |       |    || |||| |  | | | | | | | | |||      ||||   || |  |               
ATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatc--atggcattgatatgcacactgtctttcctcctctccatgctatttaatataatttattatttggttaattgaaatatttaaagctgttgaatgag

upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 8
GTACCTAATCATCCGAGGCATGAAGACATTGCATCTTCGTGTACAGCAACAGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaatatctcttttttgagtaaatatcctgacact-atccaggtgagtcatgtgagtaaa-----tatcgatgcaattttgat-ttgcag--------
 || || ||||||||||||||||||||| |||||||||||||||||||||| ||||| || || || || |||||| | ||||||||||| |||||||||||  ||| |     | |    | |  |||      | ||  |     | | |  |||   ||||     ||  |  ||  |  |  | || | |        
ATATCTGATCATCCGAGGCATGAAGACACTGCATCTTCGTGTACAGCAACAAAATTCAACAGCATTGAGGATGGCCAAGATTTTAGAGGCCCATCCTAAGgt--gcatttcaattctagaaatttcatacttcacctcttgtttttctaatttctgttgataaagaacctactgtggcgttgctagtattactgaatctggc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084095|gb|DR379854.1|DR379854
EST:     AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAG                         GTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC
genomic: AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaata ... tgatttgcagGTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC
EST: gi|125173111|gb|EL194904.1|EL194904
EST:     AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAG                         GTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAA
genomic: AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaata ... tgatttgcagGTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAA
EST: gi|86080184|gb|DR375941.1|DR375941
EST:     AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAG                         GTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC
genomic: AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaata ... tgatttgcagGTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC
EST: gi|86081248|gb|DR377005.1|DR377005
EST:     AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAG                         GTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC
genomic: AGAATTCGACCGCTTTTAGAATGGCCGAAATTTTAGAGGCACATCCTAAGgtatgcaata ... tgatttgcagGTGAGTCATGTGTACTATCCAGGCCTTCCAAGTCATCCCGAACATGAACTC