Sequence
atgc intronic sequence ATGC exonic sequenceGGCACTGTGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttttttgtccttttcgactttagcaaaagatctttgacgtaatgcttcattgtttgatttaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G01090.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G26180.1 (Glycine max), 5'ss of exon 8
GGCACTGTGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttttttgtcct-tttcgactttagcaaaagatc--tttgacgtaatg-cttcattgtttgatttaatcag-----------------------
|| |||||| | |||||| || || ||||||| || ||||||| || ||||| ||||| || ||||||||||||||||||||||| || ||||| ||| ||| |||| | || | |||| || || ||| | | ||| | |||
GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttttttgcccctattttttttttaatatttcattagtctgactgtctgtctctattttctaattaagtcatttagttcatctaattattcagaa
upper sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G49770.1 (Glycine max), 5'ss of exon 9
GGCACTGTGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttttttgtcc-------ttttcgac-tttagcaaaagatctttgac-gtaatgcttcattgtttgatttaatcag------------------
|| |||||| | |||||| || || ||||||| || || |||| || ||||| ||||| || ||||||||||||||||||||||| || | |||| || |||| || ||| | |||| |||| || || ||| | | ||| | |||
GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgtgggtttattttacccctaattgtttttaacatttcattagtaatctgtgactgtctgtctctattttctaattaagtcattttgttcatctaattcag
upper sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 8
GGCACTGTGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttttttgtccttt-tcg------actttagcaaaag---atctttgacgtaatgcttca-ttgtttgatttaatcag----------------
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GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgtttttcctttaatcgtgtaacatttcattagttgtctgtctttattgaagtgatttagtcatttaatttatctaatagtttataagacacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124980954|gb|EL053857.1|EL053857EST: GTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATG GAAGGTACTCCCCGTA
genomic: GTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttt ... atttaatcagGAAGGTACTCCCCGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCACTGTGACGTACTATCTGATACTGGACAATCGTTTCCGTGCCTCTAGTGGTTATCTCGGGGCTGAGTTTCAAGAGACCATGgttagtcttttttgtccttttcgactttagcaaaagatctttgacgtaatgcttcattgtttgatttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA