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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAGgtaaaatttgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaacag

Basic information

species Arabidopsis thaliana
transcript AT2G46020.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46020.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G03950.1 (Glycine max), 5'ss of exon 8
AGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAGgtaaa---atttgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaacag---
|||||  |  ||| |||| ||||||||||||||||||| | ||||||||| |  |||||||| || |||||||| || || || ||||       | |   | |  ||     |    |   | |   |   || | || |  ||  ||| ||  ||  ||  |   
AGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCATCGATCAAAATTATTTTCCCAAgtaagtgtgcctcacctaatcactcaaaatgttaagagtattttgttatttactgctgaatttcctttttgctacaattgcag

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G07550.1 (Glycine max), 5'ss of exon 7
AGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAGgtaaaatt--tgaaaaagtttcttttgctccagatgttttgaagacgttaattgatacatcccctgttctctttaacag---
|||||  |  ||| |||| ||||||||||||||||||| | ||||||||| |  |||||||| || |||||||| || || || ||||   |     |  | |  |||    |     | |||||      ||   || |  ||  ||| ||  ||  ||  |   
AGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCACCGGTCAAAATTATTTTCCCAAgtaagtgtgcctcactaatcacttaaaatgttagtattttgt---tattcgctgctgaatttcctttttgctacaattgcag

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 5'ss of exon 8
AGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAGgtaaaatttgaaaaa--gtttcttttgct----ccagatgttttg--aagacgttaattgatacatcccctgt--tctctttaacag
|||||| | || | ||||||||||||||| || || || ||||||||||||  |||||||||| | || ||||| || ||||| ||||  | || |||   | || ||||| |     |  || || ||  |    | | |   || | | |  |||  | | ||| | ||
AGTGAATTACACAATTGGCTGCCATCTGTGTCCTGTATTTATTATGTTGGTGGAAAGGATCAAAGATCGAAATTATTTTCTCAAgtaagctgtgcaaatttgcttattttgttagtgtccaattttctgctatagtgctgaa-aatcctttctttgtcatgtgttttatag