Sequence
atgc intronic sequence ATGC exonic sequenceCGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGgtaagaactttgagcatagccaagccatcttggataatctgatataaaatttcctcaatgtgctggtttttttcccag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G44900.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G44900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G37720.1 (Glycine max), 5'ss of exon 9
CGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGgtaagaa----ctttgagcatagcca-----agccatcttggataatc--tgatataaaatttcct--caatgtgctggtttttttcccag---------
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TGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGgtaacttgttcccttgatgtttgatgtttatggatatttttattaattgatgctagacaagtgcataacaatgtacttgcacggtctgaagcagaggtaa
upper sequence: AT2G44900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G48840.1 (Glycine max), 5'ss of exon 8
CGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGgtaagaa----ctttgagcatagcca-----agccatcttggataatc--tgatataaaatttcctcaatgtgctg-----gtttttttcccag------
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TGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGgtaacttgttcccttgatgcttgatgtttgtggatatgtttattaatcagtgctagacaagtacataaaaatgccgaaaaagtatccctttttggtgtatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125257589|gb|EL271674.1|EL271674EST: GTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAG GATGTACATGAAACTGCAGCAGGAGCTCTATGGAATCTTGCTT
genomic: GTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGgtaagaactt ... tttttcccagGATGTACATGAAACTGCAGCAGGAGCTCTATGGAATCTTGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGgtaagaactttgagcatagccaagccatcttggataatctgatataaaatttcctcaatgtgctggtttttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC