1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGGTATAAACTACTATAGCTCGCTTTTCGTGAAGAGTATCAAACACGTGGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGAgtatgtctttttttggtgattatgatttatgaataataatgatggaaactttgtgactaacttttggctcatactaaaacactttgcag
species | Arabidopsis thaliana |
transcript | AT2G44490.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATAGA AAACCAACATAGATEST: gi|124719868|gb|EH811270.1|EH811270
genomic: GATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGAT-GAgtatgtcttt ... cactttgcagAAACCAACATAGAT
EST: GGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGA AAACCAACATAGATGGGAAACAAATAGCAAAACEST: gi|124904707|gb|EH978787.1|EH978787
genomic: GGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGAgtatgtcttt ... cactttgcagAAACCAACATAGATGGGAAACAAATAGCAAAAC
EST: CCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGA AAACCAACATAGATGGGAAACAAATAGCAAAACAAGGAGGATCAGAGTGGAEST: gi|124921844|gb|EL000191.1|EL000191
genomic: CCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGAgtatgtcttt ... cactttgcagAAACCAACATAGATGGGAAACAAATAGCAAAACAAGGAGGATCAGAGTGGA
EST: GGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGA AAACCAACATAGATGGGAAA
genomic: GGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGAgtatgtcttt ... cactttgcagAAACCAACATAGATGGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTATAAACTACTATAGCTCGCTTTTCGTGAAGAGTATCAAACACGTGGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGAgtatgtctttttttggtgattatgatttatgaataataatgatggaaactttgtgactaacttttggctcatactaaaacactttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA