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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaagagaaccactgcacttagctttcatctctatgaacatcaaactttttctgatcaatgtttaattttcag

Basic information

species Arabidopsis thaliana
transcript AT2G44280.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406008|gb|EG448600.1|EG448600
EST:     GTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG                         ATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
genomic: GTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaa ... taattttcagATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
EST: gi|116399887|gb|EG442479.1|EG442479
EST:     CATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG                         ATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
genomic: CATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaa ... taattttcagATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
EST: gi|116400316|gb|EG442908.1|EG442908
EST:     CATTCTTTGTTATTGATGATTTGCAAATGGCTCCATCTGCTAAAGCTCTG                         ATTCCTGCAATAATCTA
genomic: CATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaa ... taattttcagATTCCTGCAATAATCTA
EST: gi|116399886|gb|EG442478.1|EG442478
EST:     GATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG                         ATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
genomic: GATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaa ... taattttcagATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
EST: gi|116406007|gb|EG448599.1|EG448599
EST:     CATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG                         ATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG
genomic: CATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGgtaaaagaaa ... taattttcagATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAG