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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAGgtaagcttttgcgtttttcaagagttatggcattcgtttagtgtttcacagtcataacctcgtgtttctccttctctcag

Basic information

species Arabidopsis thaliana
transcript AT2G43020.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 9
GAGGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAGgtaagc------------ttttgcgttttt----------caagagttatggcattcgtttagtgtttcacagtcataa-cctcgtgtttctccttctctcag
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GAGGTACTGCTTCCTGGTGGCCATGGTCTCATGGTTCGTGGATATCGTCCAGTAATAAATACTCTGGCAAAAGGCCTAGATATACGCCTTGGCCACAGgtatgcatatccatttagtttttccttctcactttaaaagcaaaattcatggt-tccatccaccattccttattgctaatccacattattttcttttctttag