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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACAGACTAGGCAAATCTTGCTAGCACTGCCTTCTCTTGTTGATATAAGTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGgtatgctttggtttcacctactctccgaacataatattttaatgtctcaaatgaatctgcgaggatccaccatctcctgttctcttgtttatatatgtag...

Basic information

species Arabidopsis thaliana
transcript AT2G42810.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G42810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 7
CTTACAGACTAGGCAAATCTTGCTAGCACTGCCTTCTCTTGTTGATATAAGTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGgta--tgctttggtttcacctactctccgaacataatatttta-atgtctcaaatgaatctgcgaggatccaccatctcctgttctcttgtttatatatgtag
 || || || ||  | || |||| |||  |||||||||||||||| |||  ||||||  ||||||||||| | |||||||| ||||| |||||||||||||||  || |||  |   |  |       |  ||||| |||||    ||| || |      |  ||  |   |    |  |||   | |  |   |   |  ||
ATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTTCATGGTCAGgtaattggtttattacaatatttgaattgttcataacattttttgggtcacagacttgattttga--acttaagggcagctgaagt-tgataggtgacttcag

upper sequence: AT2G42810.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G12440.1 (Glycine max), 5'ss of exon 7
CTTACAGACTAGGCAAATCTTGCTAGCACTGCCTTCTCTTGTTGATATAAGTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGgta--tgctttggtttcacctactctccgaacataatatttta-atgtctcaaatgaatctgcgaggatccac-catctcctgttctcttgtttatatatgtag
 || || || ||  |    |||| |||  |||||||||||||||| |||  ||||||  |||| |||||| | |||||||| ||||| || ||||||||||||  || |||  |   |          |   |||| |||||    ||| || |      |  ||  ||  |  || ||   |||     ||   | |      
-TTGCAAACAAGAGAGGCATTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGAAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGGtaactggtttattacaatagttgaattgtttataacattttttgggtcacagacatgattttgaacataaaggcagctgaagttgataggtgactttgga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124982622|gb|EL055414.1|EL055414
EST:     GTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAG                         TTCTACGATCTTCTCAATA
genomic: GTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGgtatgctttg ... gcttttgcagTTCTACGATCTTCTCAATA