1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAGAACCCATACCTATTTAATGGCGACTTTGTGGACAGAGGCTCATTCTCCGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctctaaaactttgttgtaataattctttgatgttcatgttttaattgcttttgctatcactggcaaggattaaattatttactattgtctgatggggttaaaagtttccattttaattgtaaatcgccatttacacacctttgtactgcag
species | Arabidopsis thaliana |
transcript | AT2G42810.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACTTTGTTTGCTTTCAAGTGCATGTGCCCATCAT CCATATATCTAGCCAGAGGAAACCATGAAAGACAAGAGCATGAACAAAATTEST: gi|125303143|gb|EL317228.1|EL317228
genomic: CACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctc ... tgtactgcagCCATATATCTAGCCAGAGGAAACCATGAAAG-CAAGAGCATGAACAAAATT
EST: CGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCAT CCATATATCTAGCCAGAGGAAACCAEST: gi|125194335|gb|EL209289.1|EL209289
genomic: CGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctc ... tgtactgcagCCATATATCTAGCCAGAGGAAACCA
EST: CGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCAT CCATATATCTAGCCAGAGGAAACCA
genomic: CGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctc ... tgtactgcagCCATATATCTAGCCAGAGGAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACCCATACCTATTTAATGGCGACTTTGTGGACAGAGGCTCATTCTCCGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATgtaagttctctaaaactttgttgtaataattctttgatgttcatgttttaattgcttttgctatcactggcaaggattaaattatttactattgtctgatggggttaaaagtttccattttaattgtaaatcgccatttacacacctttgtactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA