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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGAACCATTTGATACATACCCACGGACATATGACTTCTTACATGCCTCTGGACTCTTCTCGATCGAGAGAAAAAGgtaagcatcattatctgtaactcaagttcaaagtgatttataaatttttaatctatgatcgtgtggtgcctatagttgagtttaaccatttgtcttgtctgaatattatcag

Basic information

species Arabidopsis thaliana
transcript AT2G39750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 8
GTGTGAACCATTTGATACATACCCACGGACATATGACTTCTTACATGCCTCTGGACTCTTCTCGATCGAGAGAAAAAGgtaagcatcattatctgtaactcaagttcaaagtga---tttataaatttttaatctatgatcgtgtggtgcctatagttgagtttaaccatttgtcttgtctgaatattatcag
||||||||||||||||||||| ||| ||||||||||  |  | ||||| | | | || |||||||  ||    |||||||| |||    | |   ||| | || ||| |  |       | |  ||||||   | |    | |||| |||||| ||     |  |  || || | |   |  |          
GTGTGAACCATTTGATACATATCCAAGGACATATGATCTGCTCCATGCGTTTAGCCTATTCTCGAAGGAACAGAAAAGgta-gcagttcttttgataatt-aaattcgagttatgttcctgtttatttttctcccaaacacctgtg-tgcctaaagaaatatcca--cacttatgtgccccaa----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085589|gb|DR381348.1|DR381348
EST:     ACATATGACTTCTTACATGCCTCTGGACTCTTCTCGATCGAGAGAAAAAG                         ATGTGAGATGTCAACCATATTGTTAGAGATGGACCGGATATTAAGACCCGG
genomic: ACATATGACTTCTTACATGCCTCTGGACTCTTCTCGATCGAGAGAAAAAGgtaagcatca ... atattatcagATGTGAGATGTCAACCATATTGTTAGAGATGGACCGGATATTAAGACCCGG