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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGgtaagtggaccaaatatgttttctttccactacgtattggttcttgcatgttggttggaagtaaaaccgttttgttttaaccgtttcacag

Basic information

species Arabidopsis thaliana
transcript AT2G39130.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39130.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 9
TGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGgtaagtggaccaaatatgttttctttccactacgtattggttcttgcatgttggttggaagtaaaaccgt---tttgttttaaccgtttcacag---------
|||  |||| ||    ||||||||||||||||||   ||||| || ||||| ||| |||| ||||||||  ||||  |||||||||| |||||||| |||||| |   |  |||   |||||| ||  |      |  |  |||    ||||  |||  |    | || |    |     | |   | | | ||         
TGTGTTGGGATACCAAATGTTTGGAGAATCAACATTATCACAATTCACTCTTAACATGCCCCAAGATTTGGTTGCCTCTAAGATTGCAGTGTGGACAACGgtatgctcatgaaa---gttttcattatagagttcagagtctctaatttgttctttgttacatgatccctagactaaccattattctcttagaggaatgtaag