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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGCGTGGATTTTGGGAATTAATATGGATCTCAATTTTGGTCCCCTCGAAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatttttcgacaccttacaaaattattaatccactagacaaattaatggatgatccaagtattgagggttaaatatttttgttatgttttgtggttctttag

Basic information

species Arabidopsis thaliana
transcript AT2G38170.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125232645|gb|EL246730.1|EL246730
EST:     AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAG                         GATGGGAGTTCTCACTACATGAAGGGACTGGTCCTC
genomic: AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatt ... ggttctttagGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTC
EST: gi|124944426|gb|EL020528.1|EL020528
EST:     AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAG                         GATGGGAGTTCTCACT
genomic: AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatt ... ggttctttagGATGGGAGTTCTCACT
EST: gi|125284677|gb|EL298762.1|EL298762
EST:     AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAG                         GATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTG
genomic: AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatt ... ggttctttagGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTG
EST: gi|125090184|gb|EL148274.1|EL148274
EST:     AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAG                         GATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCT
genomic: AAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatt ... ggttctttagGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGGCGTGGATTTTGGGAATTAATATGGATCTCAATTTTGGTCCCCTCGAAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTTCACATTACAGgttaagcatttttcgacaccttacaaaattattaatccactagacaaattaatggatgatccaagtattgagggttaaatatttttgttatgttttgtggttctttag

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