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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacataggaagtctttattttccttttcttagctgaagttgtattttcaatcttgttgtttttgagtccag

Basic information

species Arabidopsis thaliana
transcript AT2G37290.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 10
GATGCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaaggaaggacatagga----agtctttattttccttttcttag---ctgaagttgtattttcaatcttgttgtttttgagtccag
       ||||||||||||||||||||||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| |||||||||||| | |||||| | ||||     || ||          ||  |    ||  || |||||   |||  ||    || || |  ||| ||    ||||||  | |  |    ||
-------TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagat-ttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtt--tctcaatcttag

upper sequence: AT2G37290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
GATGCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCGgtgagttcttatgttatgtcaaagga-aggacataggaagtctttat---tttccttt---tcttagctgaagttgtattttcaatcttgttgtttttga--gtccag----------------------------------
       ||| ||||||||||| ||| ||||||||||| || ||||||||||| || ||||| || || |||||||| || |||||||| |||||| | |||||| | ||   |||| | | ||   |  ||||    |  ||  ||   ||||||||   | ||   || |  | ||  |||| | |      |  |    ||| ||                                  
-------TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggt-ttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag