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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctttcgtctaatcttgattgtgaaactagcctcatatttgggaacctagtataccgatatatcttttcaaacacattgttgttttcaacaatttgtttgcggatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082869|gb|DR378628.1|DR378628
EST:     GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: gi|125325821|gb|EL339901.1|EL339901
EST:     TATATACGCAAG                         GACAAAGAAGCCGGTGATTGACCCGCCTGTTGAAGAGATCCTTAAAGCGTG
genomic: TATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGA-TGACCCGCCTGTTGAAGAGATCCTTAAAGCGTG
EST: gi|116467378|gb|EG509970.1|EG509970
EST:     GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: gi|125260115|gb|EL274200.1|EL274200
EST:     TATATACGCAAG                         GACAAAGAAGCCGGTGATTGTACCCGCCTGTTGAAGAGATCCTTAAAGCGT
genomic: TATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGA-TG-ACCCGCCTGTTGAAGAGATCCTTAAAGCGT
EST: gi|125117751|gb|EL166753.1|EL166753
EST:     ATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTACTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: ATCTTAGTTGCTGGCCCTGGGAAAGATAACATCT-CTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     GAATTTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
EST: gi|125186352|gb|EL201306.1|EL201306
EST:     GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTT
genomic: GAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTT
EST: gi|125258058|gb|EL272143.1|EL272143
EST:     GCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG                         GACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT
genomic: GCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGgtaatctctt ... cggatttcagGACAAAGAAGCCGGTGATGACCCGCCTGTTGAAGAGATCCTTAAAGCGTGT