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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G35690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os06g01390.1 (Oryza sativa), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaa-tatcacttttaagaatcatttca--agcccctactctttataatggcaaa------tgaaatggtcttaaaattttgttatatatgttttaaaa----caatggatcttcag-------------------------
||||||||| ||| ||    | || ||||||||||||||||||||| | ||||||||||||||||| || || |||||||||||||| ||||  || |||||     |    || |  | |||   | |   |  ||| ||   |   |   ||   |  |  |    |||||  |      ||    |      |  |   ||  |  | ||||    |       |  || | |||                         
TGGACATGGTTACCTGAACAGCAGCGGGCTTCCTGAATTGTTTGCTATCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTTGTTTTGCTATTGCAGgttagtatgctattgttgttttgttctgtggatactaataactctcctacctgcttgtggttgtgtggatggcctagcttgttgggccgaatcataggtccagtccttcaagtttcctcagttttggtcaatttacagtcataacctttggtgctctctgcag

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM5G864319_T01 (Zea mays), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag-------------------------------------------------------------------------
 |||||||| ||| ||    | |||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||| ||||  |||  || |||||    ||  |  | |||  | | |  |  |   |||   |  |||   ||  |||||  ||   |        || |||      | ||| ||||  | ||   |||||  ||  ||  |  |                                                                          
CGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCTGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATATTGTTCTGCTTTTGCAGgt----ttgtatgtttctgatggcac-tagccaataatcgtagttttg-gctactactagttg--agtatgtgcgacatgac----agattgtgttccacattagttaaagaaaaagacatagaagatgtttttgcttttcctctactccattttggacaatgatatagtaataggcatcctttgggggaacctgcag

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G052389_T01 (Zea mays), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaatatcacttttaagaatcattt--caagccccta-ctctttataatggcaaatgaaatgg--tcttaaaattttgttatatatgttttaaaacaatggatcttcag-------------------
||||||||| ||||||    | |||||||||||||| |||||||| || |||||||| |||||||| ||||| |||||||| || || ||||  || ||||| |  |   ||  || ||| | | |        |    |||||||  || ||   || | | | ||       | ||||      | ||   ||||  || | | ||||||       |   | |  |                    
TGGACATGGTTACTTGAACAGCAGTGGGCTTCCTGAGTTGTTTGCGGTCTATGTTCCCGCTTGCACTTACGAAGGAGACAACGTCGTTTTGCTTTTGCAGgtttatt---acccatattccttagtcctgacgatgtcgatcatttatcatgcttttagcacgtaatgtatttgactgaagccaattttttttatttcattgtgtgtgttttgtttttgtttttgtcaatggtgtggtgatacctgcag

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G03800.1 (Glycine max), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatct-tcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
||| ||||| ||| | ||  | ||||| || ||||| || |||||||| ||||||||||| ||||| || || ||||||||||||||| | | ||||||||| |  | |||  ||    ||||  | |    ||||   |||||||          | ||||||  | | |     | | | | |||| |   | | || |                         
TGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAGgtttgttaaaagataaaaatcttatacaatcattttgttaatcattatttaatta-agtctttactaagtccttccaca-gctgttaacaggatttaatgtg------------------------

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G14990.1 (Glycine max), 5'ss of exon 8
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatct-tcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
||| ||||| ||| | ||  | ||||| || ||||| || |||||||| ||||||||||| ||||| || || ||||||||| ||||| | |  |||||||| |  | |||  ||    ||||  | |    ||||   || ||||          | ||||||  | | |     |   | | |||| |   | | || |                         
TGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagataaaaatcttatacaatcattttgttaaccattatttaatta-agtctttactaagtccttccacg-gctgttaacaggatttaatgtg------------------------

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatct-tcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
 || ||||| ||| | ||  | ||||| || ||||| || |||||||| ||||||||||| ||||| || || ||||||||| ||||| | |  |||||||| |  | ||| |||    | ||  | |    ||||   |||||||        | | ||||||  | | |     | | | | |||| |   | | || |                         
CGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGgtttgttaaaagttaaaaatgttatacaatcattttgttaatcattatttaattc-agtctttactaagtccttccaca-gatgttaacaggatttaatgtg------------------------

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 7
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtattcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
||| ||||| ||| | ||  ||||||||||||| || || ||||| || ||||| ||||| || ||||| || ||||||||| ||||| |||  |||||||| |   | || || |       ||||| | | ||   ||||  || | ||      || ||   ||| ||||| |  | ||   || ||||||  |||||   | | ||               
TGGCCATGGTTACCTATGTAGTAGTGGGCTTCCCGAGTTATTTGCCGTGTATGTCCCTGCCTGTACATATGAAGGAGACAATATTGTGCTGCTTTTACAGgtctg--tgaaattgt-------aatatgattatttt-aatc--ttgatgctttctgtcatttccatg-caaattatgttgt---aacattttgagatatagactgttaattgcct---------

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ35164 (Selaginella moellendorffii), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtat-tcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
||| ||||||||| | || |  ||||| ||||| ||||||| ||||| |||||||||||| ||||| ||||||||||||||||| ||  | |   | ||||||  |||| |     | |  |    |  |   | ||||  |     ||                                                                             
TGGGCATGGATACCTCTGCTCCAGTGGTCTTCCAGAATTGTATGCTGCATATGTTCCTGCATGCACCTACGAGGGAGACAATGTCGTTCTTCTTCTTCAGgtaaatcttcatacagtgtcttcatgttgcgtatctaagttttgagacag----------------------------------------------------------------------------

upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ24114 (Selaginella moellendorffii), 5'ss of exon 9
TGGACATGGATACTTGTGGTGTAGTGGGCTTCCTGAATTGTTTGCTGTATATGTTCCTGCTTGCACATACGAGGGAGACAATGTTGTGTTGCAGTTACAGgtat-tcttaaacttatcttcttgaatatcacttttaagaatcatttcaagcccctactctttataatggcaaatgaaatggtcttaaaattttgttatatatgttttaaaacaatggatcttcag
||| ||||||||| | || |  ||||| ||||| ||||||| ||||| |||||||||||| ||||| ||||||||||||||||| ||  | |   | ||||||  ||||       | |  |    |  |   | ||||  |     ||                                                                             
TGGGCATGGATACCTCTGCTCCAGTGGTCTTCCAGAATTGTATGCTGCATATGTTCCTGCGTGCACCTACGAGGGAGACAATGTCGTTCTTCTTCTTCAGgtaaatcttcttacagtgtcttcatgttgcgtatctaagttttgagacag----------------------------------------------------------------------------