1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctcggttcggtttttgtttttgttcggtttggtatgcaataatttgctgaaaaaccaaaccgcttgattaattcaaaatttattcaaattttcag
species | Arabidopsis thaliana |
transcript | AT2G35260.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG ACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGEST: gi|116414696|gb|EG457288.1|EG457288
genomic: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctc ... aaattttcagACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGG
EST: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG ACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTCEST: gi|124711071|gb|EH802473.1|EH802473
genomic: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctc ... aaattttcagACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTC
EST: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG ACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCEST: gi|125272601|gb|EL286686.1|EL286686
genomic: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctc ... aaattttcagACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTC
EST: CGGTATTGAATGGGTTCAG ACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTCEST: gi|116414695|gb|EG457287.1|EG457287
genomic: CGGTATTGAATGGGTTCAGgtaaattctc ... aaattttcagACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTC
EST: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG ACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTC
genomic: CACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctc ... aaattttcagACGGATAATATATTAGCACCGATGATGACGCATGGTATATACTCGGCGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAGgtaaattctcggttcggtttttgtttttgttcggtttggtatgcaataatttgctgaaaaaccaaaccgcttgattaattcaaaatttattcaaattttcag
- - - - - - - - - - - - - - - - - - - - - - TTGAAG