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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtatatactttttcttgcaccattttttgaattctacgctccactgacaaacacataaggaaacacaaagctgagcgttgatatgtcacttttgtggctgtag

Basic information

species Arabidopsis thaliana
transcript AT2G33640.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 8
GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtatatactttttcttgcaccattttttgaattctacgctccactgacaaacacataaggaaacacaaagctgagcgttgatatgtcacttttgtggctgtag
|   |||||||| || | || || |||||     | ||| | |||||||| ||||||||||| |||||| |||| ||||||||    |    |  |  |  ||  | || | |     || |  ||    |   ||| |  | |  | |   |||  |  ||  |  |    ||               
GCCCTTTGTACAGCTGTTTCATTGCTGGCCACAGTCCCTTTGGGGGAACTATTCTTTTTCCACATGATTCTGATGCGAAAGgtgcattcctgaaatgctgctgt-ctatctctccccctccaaactatttt---aaatatctgaa-acatgaaaaattatgctcttttgctgcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401160|gb|EG443752.1|EG443752
EST:     GATACCTCTTGGGGGAACTTTTCTTTT-CCATATGATTTTGATCCGAAAG                         GGA-TCACA-CATATGAATATGGTGTTGCCC
genomic: GATACCTCTTGGGG-AACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCC
EST: gi|116400822|gb|EG443414.1|EG443414
EST:     TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAG                         GGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
genomic: TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
EST: gi|116401154|gb|EG443746.1|EG443746
EST:     TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAG                         GGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
genomic: TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
EST: gi|116401161|gb|EG443753.1|EG443753
EST:     TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAG                         GGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
genomic: TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
EST: gi|116400801|gb|EG443393.1|EG443393
EST:     TGATACCTCTTGGGGAACTTTTCTTTTTC-ATACGATTTTGATCCGAAAG                         GGGATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
genomic: TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
EST: gi|116400802|gb|EG443394.1|EG443394
EST:     TGATACCTCTTGGGGAACTTTTCTTTTTCCATACGATTTTGATCCGAAAG                         GGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA
genomic: TGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGgttttgtata ... gtggctgtagGGAATCACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCA