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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAAAGGCCGCTGCTGATCGTTGCTGAGGATGTGGAGAGCGATGCTCTTGCCACCCTAATTCTGAACAAACTTCGTGCTAATATCAAGgtttttcttttcagccttttgttatttgccttttccttacaacgtcttagtaaaaaattaatttgattggattgatgtacatggtattgctttatag

Basic information

species Arabidopsis thaliana
transcript AT2G33210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 9
AAGCAAAGGCCGCTGCTGATCGTTGCTGAGGATGTGGAGAGCGATGCTCTTGCCACCCTAATTCTGAACAAACTTCGTGCTAATATCAAGgtttttct-tttcagccttttgttatttgccttttccttacaacgtcttagtaaaaaattaatttgattggattgatgtacatggtattgctttatag
||||||||||| |||||||| |||||||| ||||| |||||||| ||  | |  || || ||| | ||||| ||||||||    ||||||||   |   |    | | ||||| |||||  | |   |      ||| ||    |    |   ||| |  |                           
AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaatactgggcatttgtgatttgaatctgtgtagt--tgtcctaaatgagggatgtgttgttcag---------------------------

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 9
AAGCAAAGGCCGCTGCTGATCGTTGCTGAGGATGTGGAGAGCGATGCTCTTGCCACCCTAATTCTGAACAAACTTCGTGCTAATATCAAGgtttttcttttcagccttttgttatttgccttttccttacaacgtcttagtaaaaaattaatttgattggattgatgtacatggtattgctttatag
|  ||||||||  | ||||| || |||||||||||||| || ||||| ||||| || || ||||| || ||||||||||||   |||||||||  | ||  |   || | |||  || | ||||  ||       |||||     | | |||||  |||||| | ||   ||  |  ||   | |||
AGACAAAGGCCTTTACTGATTGTCGCTGAGGATGTGGAAAGTGATGCCCTTGCAACTCTTATTCTAAATAAACTTCGTGCTGGAATCAAGgttggttttgcctatctgtagtt--ttacattttagtt-------cttag-gcgcattaaattt--ttggatcgttg---atttttctgtcctttag