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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaaaaaaagttcaactacatatatattctctaagattcctaaatccgatatataagtttcacatgtttacatttggatattgtag

Basic information

species Arabidopsis thaliana
transcript AT2G30290.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G41070.3 (Glycine max), 5'ss of exon 7
GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaaaaaaagtt--caactacatatatatt-ctctaagattcctaaatccgatatataagtttcacatgttt----acatttggatattgtag-----------
||||||||| |||||||||||||| |||| || |||||||||  ||| |||||| | || || || ||||| || ||||||||||||   | ||  ||| | || ||| ||| ||||     | ||  |  | | ||||   |||||  | ||     ||   || |  ||  ||           
GACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcatttttcaaattcagataaattgctctg----ttctccactctacatatttatttcaagttttccaagactagtgaacctttcagtttaacttcca

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G44580.1 (Glycine max), 5'ss of exon 7
-GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaaa--aaaagttcaactacatatatattctctaagattcctaaatccgatatataagtttcacatgttta-----catttggatattgtag------
 ||||||||| |||||||||||||| |||| || |||||||||  ||| || ||| | || || || ||||| || ||||||||||||  ||   ||||| | || ||| |||         |||    | |    | |||||||  || |  ||     | |||  || |           
GGACACTTTCCGAGGAAGAGTATGTGAATGCCCAATTGTTCAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAAggtaaattaatttttcaaattcagataaattgctctgttctccactctacatattttaagttttccaagactagtgagcctttcaatttaacttccagat

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G14800.1 (Glycine max), 5'ss of exon 7
GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaaaaaaagttcaactacatatat-attctctaagattcctaaatccgata-tataagtttc-----acatgtttacatttggatatt-gtag----------
|||||||||||||||||||||||| |||| || ||| | |||  |||  ||||| | || || || || || || ||||||||||||  |  |||    |  || || |||  ||        | |   | ||  ||||| ||||     | |     || |||  ||||| |||           
GACACTTTCAGAGGAAGAGTATGTGAATGCCCTATTATACAAAATGTGCAGTTTGTTGGGGATGGATACACCCACTGTGAAGgtaaatcactttctttaatctagattatttgcttcatcaagtcatctccatgctataaatttcaaaacataaacccacctttacatatttgtatttctaagcag

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G00510.1 (Glycine max), 5'ss of exon 7
GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaaaaaaagttcaactacatatatattct-------ctaagattcct---------aaat-ccgatatataagtttcacatgtttacatttggatattgtag----
|||||||||||||||||||||||| |||| || ||| | |||  |||  ||||| | ||||| || || || || ||||||||||||  |  ||| |  |  || ||| |||       |||| | || |         ||||  | | |||||| ||  || | |    |||| ||  || ||     
GACACTTTCAGAGGAAGAGTATGTGAATGCCCTATTATACAAAATGTGCAGTTTGTTGGTGATGGATACACCCACTGTGAAGgtaaattactttctataaattagataatctgcttcatctaataatcttcatgctataaaatatcaaaatataaattcaactt-tacgtattttgaatttctaagcag

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 7
GACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAGgtaa-----------aaaaagttcaactacatatatattctc---taagattcctaaatccgatatataagtttcacatgtttacatttggatattgtag----------------------------------------------------------------------------
|| || ||  | || ||||| ||| ||||||| ||||| ||||| |||||||||   ||||| ||||||||  ||||||||||| |           |   | | ||     | ||  || |||   |   ||| ||| |   |||  ||| ||||  ||  | |   |    ||||| |                                                                              
GATACATTTCGGGGCAGAGTGTGTGAATGTCCTATTGTGCAAGGCGTCAAGTTTACTGGTGATGGTTATACTAATTGTGAAGgtgagtgttctatttatggattacaggcttaaattaatcctcatgttgtatttctataatagatccatatgtttagcaattgtgtctcca-atattattagaactggccatttgacttttacatgaatttatatagttttattgacctcatgtttgagcatgtattgtttgaacag