Sequence
atgc intronic sequence ATGC exonic sequenceGTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAATTGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGgtatcagtttataacttattcagatgagatcagtaattttgaagtttagatgcaaatttatcaataagcattttcccaacagtttgtcacaatattgttgttataatatgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G27450.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G27450.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G07960.1 (Glycine max), 5'ss of exon 8
GTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAATTGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGgta--tcagtttataacttattcagatgagatcagtaattttgaagtttagatg-caaatttatcaataagcattttcccaacagtttgtcacaatattgttgttataatatgacag
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GTACCTCTTGTGGCATCAAATAGGATAGGAAAGGAGATAATTGAGACTGAGCATGGAAAAAGTGAGATAACATTCTATGGAAACTCCTTCATAGCAGgtaatttgacttaagtgttttcttttttgacacagaagcac---attttacttgaccggtgcagtgaggggaagcctttcattaaaagatgata-tactttttc-------------
upper sequence: AT2G27450.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0080g00560.t01 (Vitis vinifera), 5'ss of exon 8
GTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAATTGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGgta---tcagtttataactt--at--tcagatgagatcagta---------attttgaagtt---tagatgcaaatttatca-ataagcattttcccaacagtttgtcacaatattgttgt-tataa-tatgacag--------------------------------------------
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GTACCTCTAGTAGCTTCAAACCGCATTGGGAAGGAAATAATCCAGACAGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttccattcattgttttgatcatctgcagagttcaatttactctcttatcccttagttacatgcatggaattctaccctaaaatcaactttatttcagttttctattggactgaaatctgtaactctgtttgcttgcaatgatgaacatgcttggatattgatactgtgattatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86077515|gb|DR373272.1|DR373272EST: TGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCG GACCAACAGGTGAAATTGTGGCCGAGGCAGATGATAAATCGGAAGCTGTTC
genomic: TGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGgtatcagttt ... aatatgacagGACCAACAGGTGAAATTGTGGCCGAGGCAGATGATAAATCGGAAGCTGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAATTGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGgtatcagtttataacttattcagatgagatcagtaattttgaagtttagatgcaaatttatcaataagcattttcccaacagtttgtcacaatattgttgttataatatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA