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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGAAATCGCAGATTGGATCAGAAGCTTAGGGTTAACGATCTTGAAGGGAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattatataagttacacaaggttgtttaacttggaaagatgagattgtgttagaatgtatcttatttaaactgaaaccgggtcgatattggattgtag

Basic information

species Arabidopsis thaliana
transcript AT2G27230.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27230.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G09990.1 (Glycine max), 5'ss of exon 4
TCTAGAAATCGCAGATTGGATCAGAAGCTTAGGGTTAACGATCTTGAAGGGAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattatataagttacacaaggttgtttaacttggaaagatga-gattgtgttagaatgtatcttatttaaactgaaaccgggtcgatattggattgtag-----
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TCTGGAAATAGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGAGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGgta-ataaaaagggaaataactgatcat--aactcagaagtataatgaacttcctatagtataattcagt--atttgtagcct--ttaatatttgaacattttcagc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124715236|gb|EH806638.1|EH806638
EST:     GAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAG                         GCGAGTCGCGACGTGACGA
genomic: GAGTCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattata ... tggattgtagGCGAGTCGCGACGTGACGA
EST: gi|164018334|gb|ES126925.1|ES126925
EST:     ACAAGATTTGGGCTCGCTTCACTGTTGAG                         GCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATT
genomic: ACAAGATTTGGGCTCGCTTCACTGTTGAGgtatattata ... tggattgtagGCGAGTCGCGACGTGACGAGGATGGAAATATTCATGCAACTAGTGAATATT