1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGAAAAGAGATGTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctgaatctcaaccaaattactctttctttcgtatgtgaatatccttcagttacaaactctgtttgtttggtag
species | Arabidopsis thaliana |
transcript | AT2G25950.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAA GACAAAAGCCGAGACTGGTGGAGGTTTTTCACAAGTTGEST: gi|164090219|gb|ES176881.1|ES176881
genomic: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctga ... tgtttggtagGACAAAAGCCGAGACTGGTGGTGGTTTTTCACAAGTTG
EST: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAA GACAAAAGCCGAGACTGGTGGAGGTTTTTTCACAAGTTGEST: gi|19874521|gb|AU235352.1|AU235352
genomic: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctga ... tgtttggtagGACAAAAGCCGAGACTGGTGGTGGTTTTT-CACAAGTTG
EST: GTTGNTGCGACAATCGTATATGAGATTAGACCAAATCCTTCANATCACAA GACAAAAGCCGAEST: gi|86080738|gb|DR376495.1|DR376495
genomic: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctga ... tgtttggtagGACAAAAGCCGA
EST: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAA GACAAAAGCCGAGACTGGTGGAGGTTTTTCACAAGTTGAATGAAGACATCA
genomic: GTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctga ... tgtttggtagGACAAAAGCCGAGACTGGTGGTGGTTTTTCACAAGTTGAATGAAGACATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAAAGAGATGTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAgtaaacctgaatctcaaccaaattactctttctttcgtatgtgaatatccttcagttacaaactctgtttgtttggtag
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