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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGgtttccttttcttttcctcgttaagccctcttctattttcagcaaagaggtctctttaactgatttcatgaaggacatgtatattgattacacagagtttttgcgctgagccactaattttcttgctaatgttgttggtacag

Basic information

species Arabidopsis thaliana
transcript AT2G25530.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G31700.2 (Glycine max), 5'ss of exon 7
ATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGgtttccttttcttttcctcgttaagccctct-tctattttcagcaaagaggtctctttaactgatttcatgaaggacatgtatattgattacaca------gagtttttgcgctg-agccactaattttcttgctaatgttgttggtacag--------------------------------
||||||||||||||| |||||||||||| | ||||||||| ||| || ||||||| |  ||||||| |||||||| |||||||||  ||| || ||| |||| |  | ||   |      |    |    | | |||| |||           |||| |  ||  ||   |    | |  || |  | |  ||         | ||| ||   || ||  |  |  |  | |   ||  | |        |                                
ATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACTTAAATGAGgtgtgttctttactagtcaatctttcatagtatgtattgtcatttttacccattcttcagttgtgttacgggtcaataattacaccgttggcatccctgataattttctgttttggaggaatcagatcccctctcaacctagaccaattggaaacaaggcctcatacttgtctttttgtgcag

upper sequence: AT2G25530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g05270.t01 (Vitis vinifera), 5'ss of exon 7
ATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGgtttccttttcttttc-ctcgttaagccctcttctattttcagcaaagaggtctctttaactgatttcatgaaggacatgtatattgattacacagagtttttgcgctgagccactaattttcttgctaatgttgttggtacag
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||   || || || ||||| |  |||    |   |||  |     ||| | | || | |     || |||  ||||  | ||    | ||     | ||||||| |     ||| ||                                            
ATTTGCTGTTGTGGCCTTATCTGGAATTATAAGCAGATTGTTGAGTACTGGAACTGTTCTTGTGGCCACCAGTAATCGAGCACCAAATGATTTAAACCAGgtgtgttttcaaatggactcactgccaactccttttttctaacacgtgatgtcagtttattttatcagtttaacttt-tatatattgttgggcaagaattc-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057373|gb|DR353130.1|DR353130
EST:     GAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAG                         GNNNGAATGCAGAAGGAGATATTTGATAAGTTTATCTCTAAATTGGAGAAA
genomic: GAACTGTTCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGgtttcctttt ... gttggtacagGACGGAATGCAGAAGGAGATATTTGATAAGTTTATCTCTAAATTGGAGAAA