1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGgtacaacacttaacttttctctatacaattatgaagccttcatgttaagaccaaaacaccggattttttggacgaacatgactcatttgttttcatatactttttggttaatgaag
species | Arabidopsis thaliana |
transcript | AT2G23070.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATGGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAG GCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCAEST: gi|47831931|gb|CK121615.1|CK121615
genomic: CATGGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGgtacaacact ... gttaatgaagGCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCA
EST: ATGGACAAAGTTCATCAATTCTGAAAAC-AGNAACTTAGCAGTTCCTGAG GCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCAEST: gi|125309037|gb|EL323122.1|EL323122
genomic: ATGGACAAAGTTCATCAATTCTGAAAACCAGCA-CTTAGCAGTTCCTGAGgtacaacact ... gttaatgaagGCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCA
EST: AATTCTGAAAACCAGCACTTAGCAGTTCCTTGAG GCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCC
genomic: AATTCTGAAAACCAGCACTTAGCAGTTCC-TGAGgtacaacact ... gttaatgaagGCTGTTGATTTTGTGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGgtacaacacttaacttttctctatacaattatgaagccttcatgttaagaccaaaacaccggattttttggacgaacatgactcatttgttttcatatactttttggttaatgaag
- - - - - - - CATGGA