1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGgtatctatccatggacatgaaatcatcagatggacttactatcagcttcaagttgttagattctcatgtgttcttttctttccaaatttcacag
species | Arabidopsis thaliana |
transcript | AT2G21270.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAGCCTGAACGTCCCACAGCACCTGCTGCAGCTAAGGGTCCGGCAAAAG CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCEST: gi|86079583|gb|DR375340.1|DR375340
genomic: GGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGgtatctatcc ... aatttcacagCTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCC
EST: GGAGCCTGAACGTCCCACAGCACCTGCTGCAGCTAAGGGTCCGGCAAAAG CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACGGGATEST: gi|124988913|gb|EL061266.1|EL061266
genomic: GGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGgtatctatcc ... aatttcacagCTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGAT
EST: ACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAG CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGAT
genomic: ACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGgtatctatcc ... aatttcacagCTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAGgtatctatccatggacatgaaatcatcagatggacttactatcagcttcaagttgttagattctcatgtgttcttttctttccaaatttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT