Sequence
atgc intronic sequence ATGC exonic sequenceGACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagttttccatttggtttcagtgaactttttttaatggctttgacacatcaaaaggtggaagtgagtaaaagcttaaaatatgattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G20840.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 8
GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagttttccatttggtttcagtgaactttttttaatggctttgacacatcaaaaggtggaagtgagtaaaagcttaaaatatgattgcag
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GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattatcatc--acttca-tatattagaaaaaatatatttcactccct----gctaatgatctttaccccttccag------------
upper sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 8
GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagtt-ttccatttggtttcagtgaa-----ctttttttaatggctttgacacatcaaaaggtggaagtgagtaaaagcttaaaatatgattgcag-------
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GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGgtaagctgttttatgttctttttgtggatctggctttcacttgcaatgtagatgttctgcaaattgtggtcacctcattttttttgccttgttttctccatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86084332|gb|DR380091.1|DR380091EST: GACTGATAGTGCTCTGAATTTTGGGTGGTTTTTCTTCACGTATCTG TTTCACATAGCGTTTTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTC
genomic: GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagttttc ... atgattgcagTTTCACATAGCGTTTTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGgtgagttttccatttggtttcagtgaactttttttaatggctttgacacatcaaaaggtggaagtgagtaaaagcttaaaatatgattgcag
- - - - - - CTGAAG