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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTATCCACGTTCTGCATGTATACGGAAGGGTTGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATAGAACAAgtacgttttcacatcttgctttattagttttccttggtgaaaatcatcatccctgcgttgtcaccacttgacttcatgttcttttgttacattttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 8
AAGTTATCCACGTTCTGCATGTATACGGAAGGGTTGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATAGAACAAgta---------cgttttcacatcttgcttt---attagttttccttggtgaaaatcatcatccctgcgt--tgtcaccacttgacttc--atgttcttttgttacattttggcag
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AAGCTATCCTCGCACACCTTCAGTTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAAgtaagcactatccgttaacaaatttggggttcatctctacccttttcccctttaatttctattcatgaattctgctatattctgatttataacataattctgtt-cataattgcag