Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAGgttagtttgcttattcttgtctgagaaaacttttgtgaaagaatcttttatgatctttgtattgaagactatgctacgttttgacag

Basic information

species Arabidopsis thaliana
transcript AT2G18876.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18876.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G07040.1 (Glycine max), 5'ss of exon 10
GTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAGgttagtt---------tgcttattcttgtctgagaaaacttttg-tgaaagaatcttttatgatctttgtat-tgaagactatgct-acgttttgacag-
|||||||| |||||| | ||||||||||||||||||||||||||  ||||| | ||||| ||| |  |||||| ||||||  |||         || ||||| || | ||   ||| || |  | | |||     ||||||      ||  ||     | || | ||||||       
GTGGATGCTTATGAGTCAAAAAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGgtaggttcctgataggtgattattgttatttgctgaaatttctacttacagacaagattatgaatgcaatacatgtctcttctgttcacgtttcattgat

upper sequence: AT2G18876.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 10
GTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAGgttagtt---------tgcttattcttgtctgagaaaacttttg-tgaaagaatcttttatgatctttgtat-tgaagactatgct-acgttttgacag-
|||||||| |||||| | || |||||||||||||||||||||||  ||||| | ||||| ||| |  |||||| ||||||  |||         |  ||||| || | ||   ||| || |  |   |||      |||||      |   ||   | | |  | || |||       
GTGGATGCTTATGAGTCAAAGAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGgtaggttcctgataggtaattattgttatttgctgaaatttctacttgcagataagactatgaatgcaatgcatgtttattctattcacatttcattgat

upper sequence: AT2G18876.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 10
GTGGATGCATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTACGATCAACGCAGgttagt-ttgcttattct--tgtctgagaaaacttttg---tgaaagaatcttt-tatgatc--tttgtattgaagactatgctacgttttgacag----
|||||||| |||||||| ||||||||||| ||||||||||| || |||||| |||| || ||| |||| |||| ||||||  |  |    ||||||  ||| |  |   |||| ||   |||  | || ||| |||| |   ||  | |      |     |   | ||||||     
GTGGATGCCTATGAGGCAAAAAATCAAGAGCTGATGGCAGAAAATACTGATTTGAGGGCATTATTACGGTCAATGCAGgtatgcatcaactattctactgtttttgtttacttgtgctctgagtgcatttttatatgtttagttcttctctgttccacaattgaatattgacatttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164040859|gb|ES174809.1|ES174809
EST:     CGTTACTACGATCAACGCAG                         GGTGACATGCGTTCTTTCTTGAATGCTTCTGGTGGATTAACCAACCAATCT
genomic: CGTTACTACGATCAACGCAGgttagtttgc ... gttttgacagGGTGACATGCGTTCTTTCTTGAATGCTTCTGGTGGATTAACCAACCAATCT