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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G18100.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatc-tttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||||   | |||||||| ||  || |||| ||||||||||| || ||||| ||||||||||| || |||||||||| | | |||||||  ||| |     || |     |||  | |  |||   || ||  | || || |                               
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatt-tgtagttttgcccatttacactatcagcaaaaacttctaatttacactgttatt-tatgattcag----------------------------

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 10
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||||   | |||||||| ||| || | || ||||||||||| || ||||| ||||||||||| || |||||||||  |  |  ||||| | |  | | |       ||||   ||| || || |  | |||  |   | ||| |  |    || |                
GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgtt-cagggttttgtactctgcct-------tgta---cta-ctgttagtgaatgccttgtaattag-tgttgttgtttatgcag-----------

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  || |||| ||||| ||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   | | || |       |  | | | || |   ||| || |   || |||| |  |||| |||  | | ||||   |||  |   | |||
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttaggctataactttctgataaagcgaagtta--ttattttataagtagtgctgt--gaat-gatgttcatattgctgtgacttcaat-cag

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  |  |||| ||||| ||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   ||||||         |  ||| | || |    |  || ||  || |||| |  |||| |||  ||  ||||   ||| ||||   |||
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagtta--tcagtttattagtagtgctgt--gaat-gatgttagtattgctgtga-cttgcatcag

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  |  || | ||||| ||| ||||| |  ||||  ||||||||||||||||||||||||||||||||||||||    | |  ||  |    || |  |||    ||||    ||| |||  |           |  || | |   || ||||   | |   || |  ||
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattccag--gatgctagtacttttgtatgg-tatatttgagtagagatgtatatgattggtgccaatattgttgtca-tatgctttag

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  |  |||| ||||| ||  ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   ||||||         |  ||||| || |   ||  || ||  || |||| |  |||| ||   ||  ||||   ||| ||||   |||
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaaccaagtta--ttagtttattattagtgctgt--gaat-gacgttagtattgctgtga-cttgcatcag

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  |  |||| ||||| ||| ||||| |  || |  |||||||||||||||||||||||||| |||||||||||    | |  ||  |  |  | |  |||    |||| |  ||| |||  |           |  || | |   || ||||   |||  || ||  ||
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattccaggc--tgccagtacttttgtatag-tatatttaagtagagatgtatatgattggtgccaatattgttgtgatattctt-tag

upper sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
|||  |  | |||||||| ||  ||||| | ||||| || ||||||||||| || ||||||||||| |||||||||  | | | |   |      | |   |    ||  | |  ||   || ||  ||   | |     | |||  | | |||  | |||| ||| |||||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatt-tgtttggaactcatagctgctactgtttattaataattactgttatggcatca-tttgtttgt-gatcttcagatttccgtgaa-ttgctgcag