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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTCTTGGGGCGTGTCCTCAACTTCAGgtagtctgagtagctctctcgtagttagcattatgctctgctcctaatcatctaacttgattgcaactgcactgtcggggtttttggtgtcagtggttcactaacctcctgtttttttcactttctctttggttttcttctcag

Basic information

species Arabidopsis thaliana
transcript AT2G17790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 8
TGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTCTTGGGGCGTGTCCTCAACTTCAGgtagtctgagtagc----tctctcgtagttagcattatgctctgctcctaatcatctaacttgattgcaactgcactgtcggggtttttggtgtcagtggttcactaacctcctgtttttttcactttctctttggttttcttctcag
 || || |  ||| | || || |||||||||||||| || ||||| |||||||||||||| ||||| |||||  |  | || || |  || |||||||||||      | | ||    | | | ||| |||    |      |||    |   || ||  ||  ||   ||| |       |    ||  | || ||||                                                 
AGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaacttgcacatttttttgta-ttacttctggaggatgccttaatgtatatatgttttttctcactccgaaacatgaaagttcag-gttagtgaac----------------------------------------------

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 8
TGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTCTTGGGGCGTGTCCTCAACTTCAGgtagtctgagtagc----tctctcgtagttagcattatgctctgctcctaatcatctaacttgattgcaactgcactgtcggggtttttggtgtcagtggttcactaacctcctgtttttttcactttctctttggttttcttctcag
 || || | |||| | || || |||||||||||||| || || || |||||||||||||| ||||| |||||  |  | || || |  ||||||||||||||      | | ||    | | | ||| |||   ||      |||    |   || ||  ||  ||     | ||    |  |    ||  ||| ||||                                                 
GGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGTTGGGTGCTTACCCTCAACTTCAGgtcagtgaacttgcacatttttttgta-ttacttttggaggatgccttaatgtatatatgttttttctccttccaa-accatgaaagttcatgttagtgaac----------------------------------------------

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 8
TGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTCTTGGGGCGTGTCCTCAACTTCAGgtagtctgagtagctctctcgtagttagcattatgctctgctcctaatcatctaacttgattgcaactgcactgtcggggtttttggtgtcagtggttcactaacctcctgtttttttcactttctctttggttttcttctcag
|||||||| |||  | || || || ||||||||||| |||||||| ||||| |||||||| ||||| ||   | |  | ||||| || || || ||||||||      | ||    |||  | |||    ||   |  |  |  |     ||  | ||  |  ||| ||   |||| |     |||| ||  ||| ||  | ||| || |||                                
TGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTATTGGGGGCTTGCCCCCAGCTTCAGgtgagt--aatacggttcttattgtttttgtttcacagtttttgtgccattcccattt--tcacaattg--ttgtcag-----ttggagtatgtgatt-gccaacttc-tgta-------------------------------