1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATgtatgaagtttgatcccttcttatttcttttaaatattgaagagttttaattctaccaccactactatgtttccttttattggctgaaaaacgacctattaactagaaaaatgaaatctcgttctgcag
species | Arabidopsis thaliana |
transcript | AT2G15860.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCAT AGACTTTCAGAGATGTGCTGTTTTGEST: gi|164209597|gb|ES091260.1|ES091260
genomic: TCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATgtatgaagtt ... cgttctgcagAGACTTTCAGAGATGTGCTGTTTTG
EST: TCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCAT AGACTTTCAGAGATGTGEST: gi|164076374|gb|ES124549.1|ES124549
genomic: TCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATgtatgaagtt ... cgttctgcagAGACTTTCAGAGATGTG
EST: CCTAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCAT AGACTTTCAGAGATGTGCEST: gi|164048568|gb|ES149638.1|ES149638
genomic: CC-AGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATgtatgaagtt ... cgttctgcagAGACTTTCAGAGATGTGC
EST: TCTCTTCACTCAGAAGGAGTTCAT AGACTTTCAGAGATGTGCTGTTTTGCAGTCACACATCTGCTTATCCTCGGT
genomic: TCTCTTCACTCAGAAGGAGTTCATgtatgaagtt ... cgttctgcagAGACTTTCAGAGATGTGCTGTTTTGCAGTCACACATCTGCTTATCCTCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCCAGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATgtatgaagtttgatcccttcttatttcttttaaatattgaagagttttaattctaccaccactactatgtttccttttattggctgaaaaacgacctattaactagaaaaatgaaatctcgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG