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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGCCCGATGGAGTGAAACTAAGAGGTGATATTAATGTTTTGCTTTTGGGAGACCCATCAACTGCAAAATCACAGgtttgtaatgtggtctcagtatcaatggtttataataagtgtgttattctttttatattttcttacgtctctcttatttgcttgatattcgtcttacatc...

Basic information

species Arabidopsis thaliana
transcript AT2G07690.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 8
AGCCTGCCCGATGGAGTGAAACTAAGAGGTGATATTAATGTTTTGCTTTTGGGAGACCCATCAACTGCAAAATCACAGgtttgtaatgtggtctca---gtatcaatgg------tttataataagtgtgttattctttttatattttcttacgtctctcttatt--tgcttgatattcgtcttacatc
|   |||| ||||||||     ||||||||||||| ||||| |||||| |||| || ||||| || ||||| ||||||||| ||||| |  |   |    | ||| |||      ||| |||| | | ||      |||   | ||       |  | |   | |    ||||   | | | |||||  
AATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAGgttagtaatatatttctatatatttcactggaccaattttttaattaatttgaggcaatttagttgttaaaaactgattgtgccactgccacttgcattaccttttacag-

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G11220.1 (Glycine max), 5'ss of exon 8
AGCCTGCCCGATGGAGTGAAACTAAGAGGTGATATTAATGTTTTGCTTTTGGGAGACCCATCAACTGCAAAATCACAGgtttgtaatgtg-gtctcagtat----------caatggttta--taataagtg--tgttattctttttatattttcttacgtctctcttatttgc---ttgatattcgtcttacatc---------------------------------------
|   |||| ||||||||     ||||||||||||| ||||| |||||| |||| || ||||| || ||||| ||||||||| ||  | || || |   |||          ||||  ||||  ||||  |||    ||    | || | |   | ||  | | ||   |||| |   ||    |||   ||  | |                                       
AATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAGgttagttttatgtgtatatatattttgccagaccaattttttaattaatttgtggcaattgagttgttaaaaacctattgggccactgccattttcattttttcgttcacattgtagcttgttttctcctgtgagttgaccattaccttttttacag

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 8
AGCCTGCCCGATGGAGTGAAACTAAGAGGTGATATTAATGTTTTGCTTTTGGGAGACCCATCAACTGCAAAATCACAGgtttgtaatgtggtct-cagt-atcaatggtttataataagtgtgttattctttttatattttcttacgtctctcttatttgcttgatattcgtcttacatc
|   | || ||||| |||||| ||||||||||||| |||||  |||||||||| || ||||| ||||| |||||||||||  || || ||   |  |||  | ||||  | | |  |  | | ||      | | | | ||   | |  |      |||  |  | |  | | | |  | 
AATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAGgtcagtcatatgccttgtagttgttaatgtgtcagatgacctatttttaatcctatttgtgttggaagggttgataattttaatccagac-catgtcatct-