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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCCGGgtatgttctctaatgcttaacccaatagctatattcagcttatggttatgcattcttgaatcatatttttggatatgatatgaatataagatattaatttttgttttcctttag

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442939|gb|EG485531.1|EG485531
EST:     GCTCTAAGACCCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCCCGG                         GTATTTTCGTTGCACTAGCTCTAAGATTTGATGTGTCAAGACGTAGACAA
genomic: GCTCTAAGACCCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCC-GGgtatgttctc ... tttcctttagGTATTTTCGTTGCACTAGCTCTAAGATTTGATGTGTCAAGACGTAGACAA
EST: gi|164081001|gb|ES026986.1|ES026986
EST:     TGCTCTAAGACCCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCCGG                         GTATTTTCGTTGCACTAG
genomic: TGCTCTAAGACCCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCCGGgtatgttctc ... tttcctttagGTATTTTCGTTGCACTAG
EST: gi|125192251|gb|EL207205.1|EL207205
EST:     ACATTGTCATTCCGG                         GTATTTTCGTTGCACTAGCTCTAAGATTTGATGTGTCAAGACGTAGACAAC
genomic: ACATTGTCATTCCGGgtatgttctc ... tttcctttagGTATTTTCGTTGCACTAGCTCTAAGATTTGATGTGTCAAGACGTAGACAAC