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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCAAAACAATAGCTGAAATTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAGgtaattcgtaagctttctatcattttgttattcctgtggccatgaggtaaatgtcaatggtactgataagccattcttgagcattcttcgtatatttgaccaacccattaaccccagtgagaaatgcacatgtcaactatgtccttaacaaagaaattgttttgccag

Basic information

species Arabidopsis thaliana
transcript AT2G01320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01320.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g03144.1 (Oryza sativa), 5'ss of exon 8
TCTCCAAAACAATAGCTGAAATTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAGgtaattcgtaagctttctatcattttgttat--tcctgtggccatgaggtaaatgtcaatggtactgataagccattcttgagcattcttcgtatatttgaccaacccattaaccccagtgagaaatgcacatgtca-actatgtccttaacaaagaaattgttttgccag
  || ||     | ||||||||||||||||| |||||||| || ||||| |||||  |  | || || || ||| ||   ||| |||| || || || |||||| |  ||  ||  || | |||| |  ||    ||| |||  |    || ||| ||   | |   |||    | | | ||   |||      |||||     |        | |||   |  ||    |||  ||  |||     | |                     
CTTCTAAGTTGTTGGCTGAAATTCCTATTGGGGCTGCATTCCCATTGATATTTGGATCCATTCTTTATCCAATGTCTAAACTTCATCCTACATTTTCTAGgtaagtattatcctccctctaatttagaaatgaatctgaggcactttattacatgccac--gcagaaatagtagaatatcgatagttcgatac-tattttgtttat------gctccatcaaacaa----cattccatgctacactttcag--------------------

upper sequence: AT2G01320.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 8
TCTCCAAAACAATAGCTGAAATTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAGgtaattcgtaagctttctatcattttgttattcctgtggccatgaggtaaatgtcaatggtactgataagccattcttgagcattcttcgtatattt--gaccaacccattaaccccagtgagaaatgcacatgtcaactatgtccttaacaaagaaattgttttgccag
|||| |||    | ||||| ||||| |||||||| |||||||| || ||||||||||||||  | || || ||||| || ||| |||| ||| ||  |||||   | |||   |||  ||||  |||  |||    |    ||        |    |  ||| |     |  ||| |     ||||||  |||      |||                                                                    
TCTCAAAATTGTTGGCTGAGATTCCCATTGGAGCAGCATTTCCATTAATGTTTGGTGCTGTTTTGTATCCAATGGCACGTCTTCATCCTACTATGCAAAGgtg--ttgtag--tttgaatcaaattgcaattttctttcatattttactttttgggaaagtagtagattgaaattttctgtaattctttatatgacgaggactg------------------------------------------------------------------

upper sequence: AT2G01320.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0011g04670.t01 (Vitis vinifera), 5'ss of exon 8
TCTCCAAAACAATAGCTGAAATTCCTATTGGAGCTGCATTTCCTTTGATGTTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAGgtaattcgtaagctttctatcattttgttattcctgtggccatgaggtaaatgtcaatg--gtactgataagccattcttgagcattcttcgtatatttgaccaacccattaaccccagtgagaaatgcacatgtcaactatgtccttaacaaagaaattgttttgccag
| || |||    ||||||| || ||  ||||||| |||||||| || |||||||| |||||  | |||||||||||||| ||| |||| |||||||  | || | |       ||| |  | ||||| ||   |       ||    | |   |  |||  || ||   |||| | | | ||  |||| || ||| ||| |  ||                                                                 
TTTCTAAATTGTTAGCTGAGATCCCGGTTGGAGCCGCATTTCCATTAATGTTTGGGGCTGTTTTGTACCCCATGGCTCGTCTTCATCCTACTTTGTTCAAgtgagtt-----ttttatgcctttttgctagcaccagtttgattttctgacattagatgcagttctacaaagctagtttagaaaattcctcatatgttt-ataaat----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072831|gb|DR368588.1|DR368588
EST:     TTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAG                         ATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCATTTGCTGCGTCTGC
genomic: TTTGGTGCTGTACTATACCCCATGGCTCGCCTTAATCCCACTTTGTCAAGgtaattcgta ... gttttgccagATTTGGAAAATTTTGTGGGATAGTGACTGTGGAGTCATTTGCTGCGTCTGC