1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTGATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGgtgagagagaacttccatcaatcatattcatatactgcgatctcgtgagtagcataagcaagagtgtaacaaaattgtctctgatttcgtag
species | Arabidopsis thaliana |
transcript | AT1G80910.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCACCAGGAAAGGTAGCAACACTAGCAAAG GAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACEST: gi|86081029|gb|DR376786.1|DR376786
genomic: CCACCAGGAAAGGTAGCAACACTAGCAAAGgtgagagaga ... gatttcgtagGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATAC
EST: TGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAG GAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGNNNNN
genomic: TGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGgtgagagaga ... gatttcgtagGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTGATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGgtgagagagaacttccatcaatcatattcatatactgcgatctcgtgagtagcataagcaagagtgtaacaaaattgtctctgatttcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG